2601 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome da...2600 days ago
2598 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation...ers using Illumina paired reads of three bacterial genomes. Our algorithm constructs a...roved when additional data, in the form of related genome se...2596 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes s...2596 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo as...ns with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome ye...2595 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for...arison of assemblies to alignment of large syntenic genomic regions and whole genome hu...2595 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks...ynteny blocks among multiple species by using prebuilt alignments in the UCSC genome br...2595 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-activ...nd comprehensive CAZyme annotation of a given genome submitted by the user; dbCAN...full-length CAZyme proteins in all sequenced genomes;...2590 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate qui...ck, efficient annotation of similar genomes using genomes that have already been annot...hms to map genes from the reference genome (the annotated strain) to the...it was designed for use with viral genomes,...2590 days ago