Results for "B"
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DarkHorse is a bioinformatic method for rapid,...cal proteins on a genome-wide basis. It works by selecting po...matches from a reference database of amino acid sequences, t...to the phylogenetic distance between database match sequence...I scores are unlikely to have been horizontally transferred,...2938 days ago
- ...T), the transfer of genetic material between organisms, is crucial f...its recipient genome. Detecting HGT between closely related species...a great importance in detecting HGT between congeneric species or s...confirms candidate transferred genes based on the constant rela...
2938 days ago
Linux command line exercises for NGS data processing
...nside: [uzi@quince-srv2 ~/]$ cp -r /home/opt/MScBioinformatics/linuxTutorial ....[uzi@quince-srv2 ~/linuxTutorial]$ I have deliberately chosen Awk in the exer...s a program that takes your commands from the keyboard and gives them to the ope...2938 days ago
- ...next-generation, sequencing, bowtie, sam, bam, primer, tutor...ow-to, introductionRevisions 1.0: May 30, 2...ed with Disqus Comments / Feedback section. ...he primer is also designed to be self-contained and hands-on,...
2937 days ago
- ...g sequence reads from a reference genome. It is able to simulate diploid genomes...polymorphisms, and simulate reads with uniform substitution sequencing errors. I...ncing errors, but this can be partly compensated by simulating INDEL polymorphis...
2937 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is impl...verages the use of R and python in background for specific modules...need to write programming code. CSBB is currently available on Li...
2931 days ago
- ...sy to identify what are the properties of a read based on its SAM flag value, or...onversely, to find what the SAM Flag value would be for a given combination of p...decode a given SAM flag value, just enter the number in the field below. The enc...
2930 days ago
- ...echnologies for mapping interactions between DNA regions, e.g., ChIA...ate genome-wide maps of interactions between regulatory elements. Th...plexity of genomic information and public ontologies, making sense o...sets, 3) querying network components based on gene name or chromosom...
2933 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...te program for assigning taxonomic labels to metagenomic DNA sequenc...programs designed for this task have been relatively slow and comput..., forcing researchers to use faster abundance estimation programs, w...fastest mode, Kraken classifies 100 base pair reads at a rate of ov...2933 days ago
- ...d is directly assigned to a taxon within the NCBI taxonomy by comparing it to a reference...s either the available complete genomes from NCBI RefSeq or the microbial subs...reads per minute using, for example, only 10 GB RAM with a protein database c...
2933 days ago
