Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strate...ly related species. Input formats, automated data upload from the UCSC Genome Browser...2538 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of...ces such sequences for ancestral genomes at the internal nodes of the...ion and deletions in addition to genome rearran...2533 days ago
2532 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor availab...here are more and more researchers sequencing new genomes. These researchers require t...the functional features of their newly sequenced genomes. With...2530 days ago
2527 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role...he potential and limitations of computational and experimental approaches to genome analysi...2521 days ago
2519 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short...ds derived from the 15.4 megabase genome of the haploid yeast Pic...ia stipitis. More than 95% of the genome is recovered, with no errors;...d prospects for assembling larger genomes are di...2428 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150...as an error in some read at every base in the genome. These errors make handling t...orUM by correcting actual Illumina reads from genomes for wh...2426 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases....ne can annotate a typical-sized bacterial genome within 10 minutes, with rich...s gene assignment between given reference genomes. In ad...2420 days ago