SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...DB • Project name: SeQuiLa-cov • Project home page: http://biodatageeks.org/sequila/ • Source code repository: https://github.com/ZSI-Bio/bdg-sequila &bul...1663 days ago
HaploTypo: a variant-calling pipeline for phased genomes
...reference genome. Availability and Implementation HaploTypo is implemented in Python 2.7 and Python 3.5, and is freely available at https://github.com/gabaldonlab/haplotypo, an...1659 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional&...1486 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantl...1642 days ago
heatmaply: popular graphical method for visualizing high-dimensional data
...provides otherwise almost identical features. Documentation for this package is also available as a pkgdown site: http://talgalili.github.io/heatmaply/1636 days ago
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ngs-bits - Short-read sequencing tools
Binaries of ngs-bits are available via Bioconda. Alternatively, ngs-bits can be built from sources: Binaries for Linux/macOS From sources for Linux/macOS From sources for Windows1631 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
...from the genome assembly result, annotate mitogenome (genbank file as result), and mitogenome visualization. MitoZ is available from https://github.com/linzhi2013/MitoZ. https:...1623 days ago
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FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
...equencing data and predicts the genotype. All this takes less than 1 hour on average low-cost Linux server. http://bioinfo.ut.ee/FastGT/ https://github.com/bioinfo-ut/GenomeTester4/1619 days ago