PBSuite: Software for Long-Read Sequencing Data from PacBio
.../article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequencing reads (such...is an implementation of two variant-identification approaches designed to exploit the high mappab...2688 days ago
YASRA: Reference based assembler
...eference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ. Sp...and http://www.bx.psu.edu/~rsharris/lastz/newer for newer version) for aligning the sequences to the refe...2686 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...wing and manipulating the output from pairwise alignment programs such as blastz....dotplot, pip, and text representations of the alignments, a diagram showing the...r platforms; indeed its name stands for "Local Alignments with Java". Currently i...2686 days ago
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CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data i...under development. Functionality and the user interface may still change significantly from one version to...2681 days ago
2680 days ago
SeqMule: Automated human exome/genome variants detection
...STQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs...can change the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule also has...2680 days ago
2673 days ago