2909 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...y expensive, forcing researchers to use faster abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-mers, Kraken achieves cl...2896 days ago
2896 days ago
2894 days ago
Bioinformatics tools and software
...han BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate tha...enomes. QSCORE >Compare two multiple alignments for benchmarking. PALS...A benchmark collection >Selected multiple alignment benchmarks in a standardized...2888 days ago
2846 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and str...2761 days ago
2801 days ago
2767 days ago
Maq: Mapping and Assembly with Quality
...ants and evaluate the results in one go: maq.pl demo ref.fasta calib-30.dat where calib-30.dat is contained in maq-data. View the alignment: cd maqdemo/easyrun; maqind...2748 days ago