Results for "BED files"
Bookmarks
...cess with empirical error models or quality profiles summarized from large recal...using user own read error model or quality profiles. ART supports simulation of s...nerate alignments in the SAM alignment or UCSC BED file format. ART can be used to...2792 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing librar...sample (single or paired-end sequence reads). When HybPiper generates sequence files from the reads, it does so in...
2791 days ago
- Background. Next-generation sequencing technologies are now producing multiple time...oftware. More at https://sourceforge.net/projects/record-genome-assembler/files/
2769 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contig...
2757 days ago
- fqtools is a software suite for fast processing of FASTQ files. Various file manipulations a...take either a single file or a pair of files as input. If no input file is...ata, either a single file or a pair of files will be generated. If no ...
2756 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave)....gz | fastaAllSize > mysequences.stat Substitute fastqAllSize for fastq files. ./permute.sh mysequences&nb...2756 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-...semblyClass/01.%20Assembly%20Intro.pdf http://lsl.sinica.edu.tw/Services/Class/files/20150612449.pdf http://www.c...2753 days ago
- caffMatch is a novel scaffolding tool base...to contigs (instead of providing .sam files). The arguments accepted by...this is the directory where ScaffMatch files are stored. These are .sam fi...t use this option if you provide reads files; -1) (Comma separated...
2751 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is u...and lower number of contigs. More at https://sourceforge.net/projects/sb2nhri/files/MyPro/...2750 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomi...rge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs...2745 days ago
