DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGcha...counts for the distance between neighboring genes on each DNA molecule and the BLAST E-v...2661 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consist...g a Venn diagram showing intersection among different callers, and downloading databases. SeqMule can be used for both...2643 days ago
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NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and ar...;NCBI Handbook chapter. NCBI's annotation pipeline depends on several internal databases and is not currently availabl...2574 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar gen...s from tedious manual annotation of these sequences. The program utilizes tBLASTn and BLASTn al...2561 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to...he Basic Local Alignment Search Tool (BLAST) has revolutionized the field...echniques, the utility of traditional BLAST implementations is limited. C...ebchem.ncbr.muni.cz/Platform/App/CrocoBLAST2504 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started...2391 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST wit...2379 days ago