RNAcon: web-server for the prediction and classification of non-coding RNAs
...s. The structural information based graph properties were used for the development of prediction model. The standalone version (Linux-based command-line) of RNAcon is freel...2623 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...ce its first launch in 2016. Here, we present a newly implemented background annotation engine for DFAST, which is also available as a standalone command-line program. The new engine...2502 days ago
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ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single command, (ii) testing and visualizi...2405 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
...should able to take an R data frame with information about the relationships between members of a network and create full network graphs with one command.2359 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...) using above technologies combinations of the above technologies (e.g. scaffold long reads with Hi-C reads) See below for specific examples of command line options and best practic...2320 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...laps.paf # PacBio read overlap ./minimap2 -x ava-ont reads.fa reads.fa > overlaps.paf # Nanopore read overlap # man page for detailed command line options man ./minimap2....2284 days ago
NanoPack: visualizing and processing long-read sequencing data
...d the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. https://ac...2233 days ago