Results for "Dot Net and Sql"
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Background. Next-generation sequencing technologies are now prod...nome studied in the experiment and the reference genome of the s...his information is disregarded and the reference genome is used....software to experimental reads and so-called pseudoreads and use...re at https://sourceforge.net...2746 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of...-the bamtools library (https://github.com/pezmaster31/bamtools) -zlib (http://www.zlib.net...
2733 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming...ity prokaryotic genome assembly and annotation can be obtained wi...s assemblies, higher N50 values and lower number of contigs. More at https://sourceforge.net...2726 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm whi...Much as distance-based phylogenetic reconstruction methods like...oding Methods for Optimization and Control of Multiple Alignment...problems such as aligning thousands of sequences or megabase-lon...t of multiple alignment. This rand...2673 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application th...ailable at:http://sourceforge.net/projects/brig If you have an...Forge page:http://sourceforge.net/tracker/?group_id=328245. Fe...a central reference sequence and other sequences as concentric...ft genomes; customized graphs and...
2663 days ago
- MaxBin is software for binning assembled metagenomic sequences b...on algorithm. Users can understand the underlying bins (genomes)...ssembled metagenomic sequences and the reads coverage informatio...mated completeness, GC content and genome size in the binning su...es as well as MaxBin and...
2645 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, wh...e (revision 4627), Makefiles, and scripts. A subset of th...kage (http://kmer.sourceforge.net/, version r1994), used by som...[http://samtools.sourceforge.net/ SAMtools], [http://www.cbcb....ificBiosciences/BLASR BLASR], and...2610 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes...lled mapping. The most used mappers of DNA-seq data are BWA and Bowtie for DNA-Seq data and...
2588 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of dra...A also hints at probable misassemblies and contaminations, for the users...s draft. The CLA pipeline was designed and trained extensively on variou...olds. Script https://sourceforge.net...2585 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs...or an earlier assembly, onto the latest assembly. PAGIT bundles these software and...2578 days ago
