DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices...2246 days ago
Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R package. Even beyond this course, youmay find this useful for storing functions you create for your own research or f...1579 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
...cept, but wraps most of the process of extracting genomes in simple R functions. Thereby making the whole pro...but rather a package to integrate different binning strategies. All functions in the mmgenome R package has...2138 days ago
vcfR: a package to manipulate and visualize VCF data in R
...asy manipulation and visualization of variant call format (VCF) data. Functions are provided to rapidly read...r function extracts matrices from the VCF data for use with typical R functions. This information can then be...2061 days ago
regioneR: an R package for the management and comparison of genomic regions
...ful and customizable permutation test framework. With it, it's possible to study the association of a set of regions with other sets of regions, functions defined over the genome or es...2014 days ago
genoPlotR - plot gene and genome maps project!
...annotations for genomes, based on gene names Add a user-generated tree Add a global scale or a scale to each line Use user-defined graphical functions to represent genes...2013 days ago
Biotite: A general framework for computational biology
...nd Cython. This package focuses on working with sequence and structure data and supports various file formats and analysis and manipulation functions.2008 days ago
1983 days ago
Quick tour of Genetic Algorithms !
The R package GA provides a collection of general purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools for implementing g...1977 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
...hATE) across a user-specified set of phage genomes. This tool incorporates a de novo phage gene-calling algorithm and assigns putative functions to gene calls using protein-,...1858 days ago