Points: 99
Seema Singh
10,000 Plant genome sequencing project https:/
(3072 days ago)
- Seema Singh is now a friend with Arup Ghosh
- Seema Singh is now a friend with fanhhuizhong
- Seema Singh created a page Convert VCF to tab-deilimited table
- Seema Singh commented on a bookmark BINC (BioInformatics National Certification) Website address in the group BioInformatics National Certification (BINC)
- Seema Singh posted a new ad in the Opportunity FAULTY POST AT MAHARSHI DAYANAND UNIVERSITY, ROHTAK
Convert VCF to tab-deilimited table
Last updated 3025 days ago by Seema SinghPerformed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should also be...
Jit
5557 points
5557 points
Jitendra Narayan
2644 points
2644 points
Rahul Nayak
2300 points
2300 points
Neel
1649 points
1649 points
BioStar
1297 points
1297 points
- By Seema Singh 3072 days ago
ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
By Seema Singh 3040 days agogithub.com - ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper...DendroPy: a Python library for phylogenetic computing
By Seema Singh 3047 days agopypi.org - DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in a...
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