Results for "Perl script"
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Useful script for NGS analysis.2741 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdf...type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST...he kmer, cvCut, expCov, and other flags To Run: perl f...2732 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produ...(reads and contigs). The tool is written in Python 2.7. It also includes a bash script wrapper that calls aligner in...
2728 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages....2722 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number of sequence (F...2722 days ago
Many-Core Engine (MCE) for Perl example
...options; :manager, :worker, and :getter. REQUIREMENTS Perl 5.8.0 or later. PDL::IO::Storable is required in scripts running PDL. SOURCE AND F...are hosted at GitHub. https://github.com/marioroy/mce-perl https://github.com/marioro...2679 days ago
- The official documentation of the Perl 6 programming language is now publish...of built-in subroutines and methods. Perl 6 ProgramsA collection of documents describing how to run the Perl 6 executable program and othe...d Perl 5 language can be found on the Perl 5...
2677 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived...ested on version 10.2.4 only) and Microsoft Windows platforms and is written in Perl/T...
2662 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can chang...2644 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generatio...le reference sequence (one sequence in one FASTA file). Just run the main script, snpgenie.pl, in a directory...
2621 days ago
