CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amin...he nucleotide sequences of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutioniz...2519 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and betw...at detects CHSs based on shared gene content alone. It implements fast greedy search algorithm and rigorous statis...2402 days ago
2392 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant ac...stands for Parallel Local Sequence Alignment Search Tool and is was pub...2390 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relations...ies of transcriptional regulations. To efficiently search for regulatory relationships...y relationships are known for mode of regulation. Search at : http://www.grnpedia...2369 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https:...2350 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization fro...nts in all eukaryotes, allowing not only TE specialists to add new events and search the database, but also non-sp...2336 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small...sting identifiers (one per line) or by using the gene ID search tool or with the BLAST search tool Click "Visualize co...2331 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and...2319 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets....ame sensitivity. It can perform profile searches with the same sensitivity a...eqs2 enables sensitive protein sequence searching for the analysis of massiv...2278 days ago