2687 days ago
2663 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, D...orted. This algorithm can be used to mine large evolutionary conserved regions of genomes between two organi...2662 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs...n links to other web sites containing additional information about particular regions. The program is written in J...2650 days ago
2644 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and arch...genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats,...2574 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the resul...2572 days ago
AVID: A Global Alignment Program
...efficient, and practical for sequence alignments of large genomic regions up to megabases long. We prese...d, ranging from the comparison of assemblies to alignment of large syntenic genomic regions and whole genome human/mouse...2566 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks....t alignments in the UCSC genome browser database, (ii) visualize and download synteni...2566 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-acti...nbsp;hidden markov models (HMMs) and phylogenies of the signature domain regions in each and every CAZyme fami...2561 days ago