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GoJS is a feature-rich JavaScript library for implementing custom interactive diagrams and complex visualiza...de requirements. GoJS does not depend on any JavaScript libraries or frameworks, so it should work wi...2748 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome...
2739 days ago
- ...ing .sam files). The arguments accepted by ScaffMatch are: -w) Working directory -- this is the d... -c) Contig fasta file; -m) Command line argument with no options. It is used when .sam files a...
2727 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, oft...am for assemblies generated with Oxford nanopore sequences, the program should work wi...
2721 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motifs in collec...tasets (MEME-ChIP). The MEME Suite is comprised of a collection of tools that work to...
2717 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program has unique fe...y designed to deal with bioinformatics data files and servers: optimized to work wi...
2653 days ago
Many-Core Engine (MCE) for Perl example
...-Core Engine. The various MCE options are described here. MCE::...e engine to enable queuing to work for both children (spawned fr...ew level for ease of use. Two options (chunk_size and max_workers)...mce_wid. The module allows 3 options; :manager, :worker, and :getter. REQUIREMENTS...2678 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --h...ons.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i A bed fi...
2665 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary...-jar splitbam.jar -p OUT/__CHROM__/__CHROM__.bam -R ref.fasta (bam|sam|stdin) Options -h help; This screen. -R...2650 days ago
- Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used...All the nodes in the tree are clickable. This displays various information and options: The species name (and the...
2609 days ago
