Results for "de-novo%20assembly"
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Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In addition to the role of a typical as...2842 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembl...
2829 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical er...
2787 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in total reads from a single experiment. This is enough information to re...
2765 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed represe...
2752 days ago
- The objective of this activity is to help you understand how to run Velvet in general, how to accurately estimate the insert size of a paired-end library through th...
2751 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse spec...2745 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also useful for the same:...2748 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assem...2745 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, so...2741 days ago
