Results for "input"
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...available and a brief description of their purpose. Most of the individual subcommands will take either a single file or a pair of files as input. If no input file is specified, fqtools wi...2740 days ago
- ...as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it implements a...
2729 days ago
Many-Core Engine (MCE) for Perl example
...the line being the data and bank-tellers the parallel workers. MCE enhances that model by adding the ability to chunk the next n elements from the input stream to the next available...2686 days ago
FSA: Fast Statistical Alignment
...for constructing better alignments: FSA uses machine-learning techniques to estimate gap and substitution parameters on the fly for each set of input sequences. This "query-specif...2680 days ago
- ...es and read coverage can be displayed for draft genomes; customized graphs and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene presen...
2670 days ago
- ...om in/out functions. J-Circos uses the Java computer language to enable it to be used on most operating systems (Windows, MacOS, Linux). Users can input data into J-Circos using flat...
2669 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...tes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of...DAGchainer utility and a Java-based graphical interface that allows the inputs and outputs to be navigated...2668 days ago
splitbam: splits a BAM by chromosomes
...a mock pair of sam records to the empty bam -p (output file/bam pattern) REQUIRED. MUST contain __CHROM__ and end with .bam -s assume input is sorted. -x | --index crea...2658 days ago
- ...ve to a single reference sequence (one sequence in one FASTA file). Just run the main script, snpgenie.pl, in a directory containing the necessary input files, and we take care of th...
2627 days ago
- ...he aggregates and intersections, as well as additional summary statistics derived from subset or element attributes. To begin, input your data using one of the three input styles. "File" takes a cor...
2613 days ago
