GeneProf: analysis of high-throughput sequencing experiment
...ith a working internet connection -- no need to install software! (cp. Section 'System Requirements'). Analysis wizards make your life easy:Step-by-step workflows make it easy to analyse high-throu...2548 days ago
QuorUM: An Error Corrector for Illumina Reads
...h low (advertised 1%) error rate, 100 × coverage Illumina data on average has an error in some read at every base in the genome. These errors make handling the data more compli...2422 days ago
2410 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...t clone https://github.com/lh3/minimap && (cd minimap && make) git clone https://github.com/lh3/miniasm && (cd miniasm && make) # Overlap minimap/minimap...2403 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
..., a nanopore-based sequencing instrument, the Oxford Nanopore MinION, has become available that we used for sequencing the S. cerevisiae genome. To make use of these data, we develop...2401 days ago
Alfred: BAM Statistics and Feature Counting
...cies are included as submodules so you need to do a recursive clone. git clone --recursive https://github.com/tobiasrausch/alfred.git cd alfred/ make all https://github.com/tobia...2346 days ago
2308 days ago
MITObim - mitochondrial baiting and iterative mapping
...ou can find a few basic tutorials for how to run MITObim and I encorage you to give them a try with the testdata that comes with this Repo, just to make sure everything is running sm...2241 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
...alignment so that it becomes more suitable for phylogenetic analysis. This server implements the most important features of the Gblocks program to make its use as simple as possible...2216 days ago
2213 days ago