Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy...sely related species. Input formats, automated data upload from the UCSC Genome...2535 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of...uces such sequences for ancestral genomes at the internal nodes of the...tion and deletions in addition to genome...2530 days ago
2529 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor availabl...there are more and more researchers sequencing new genomes. These researchers require t...e the functional features of their newly sequenced genomes...2527 days ago
2524 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role i...the potential and limitations of computational and experimental approaches to genome...2518 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short...ads derived from the 15.4 megabase genome of the haploid yeast Pic...hia stipitis. More than 95% of the genome is recovered, with no errors;...nd prospects for assembling larger genomes...2425 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150...has an error in some read at every base in the genome. These errors make handling t...uorUM by correcting actual Illumina reads from genomes...2424 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. D...ine can annotate a typical-sized bacterial genome within 10 minutes, with rich...us gene assignment between given reference genomes...2418 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly...orthologous and paralogous copies in all the other sequenced metazoan genomes...2414 days ago