Results for "R"
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Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and...ping interactions between DNA regions, e.g., ChIA-PET and HiC...ritization of critical loci for important cellular functions....1) building and visualizing chromatin interaction networks, 2...2912 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic...bels to metagenomic DNA sequences. Previous programs designed for t...ow and computationally expensive, forcing researchers to use faster...Kraken achieves classification accuracy comparable to the fastest...2912 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a...erence database containing microbial and viral protein sequen...n database comprising 4821 microbial genomes. Kaiju can also...
2912 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The d...ta and tools presented by greengenes can assist the researcher in choosing phylogen...
2910 days ago
- In machine learning, computers apply statistical learning techniques to automatically identify patterns in data. These techniques can be used to make highl...crolling. Using a data set about homes, we will create a machine learning model...
2908 days ago
- Records in 4DGenome are compiled through comprehensive literature curation of experimentally-derived and computationally-predicted interactions. The current release c...predicted interactions in 5 organisms. Experimental data cover both high t...
2905 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLA...ultiple sequence alignment. Faster and more accurate than CLUSTA...d other marker genes. Highly accurate OTU sequences and improved...ompare two multiple alignments for benchmarking. PALS >W...2904 days ago
Fancy Oneliner for Bioinformatics !!
...webpage lists some of the one-liners that we frequently use in metagenomic an...n click on the following links to browse through different topics....nds as they are in your terminal screen, provided you follow the s...e appropriately credited as considerable effort has been put into...2902 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other features incl...imate insert size distributions from data. Scarpa is available free of charge...
2896 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate...scaffold maps, allowing either to build gapped scaffolds or...and ii) the small_contig_inserter, which inserts the small c...
2896 days ago
