CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...this method with data from chromosome painting experiments to produce a map of an early mammalian genome...ilable human genome sequence data. The precision is further increased by mapping inversions as small as 31...2607 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01&nb...2607 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...an 20 available assemblers it is hard to select the best tool. In this context we propose a tool that improves assemblies (and, as a by-product, perhaps even assemblers) by merging...2606 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome...2606 days ago
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npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial dat...of genes from mobile elements (plasmids and genomic islands). Complete paper at https://www.ncbi.nl...2602 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse informat...-maximization procedure and an unconstrained binary quadratic programming approximation of the original pr...2602 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic, proteomic, metaproteomic shotgun and amplicon...2601 days ago
AVID: A Global Alignment Program
...nments of large genomic regions up to megabases long. We present numerous applications of the method, rang...AVID Web address and Web addresses for other programs discussed in this paper....2601 days ago