Results for "IG"
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DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral ge...2642 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in repl...ll as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a...
2629 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called...2629 days ago
- ...quences comes from, which gene it represents...To know that you have to align the sequences to the referen...quence but sometimes, a library of EST sequences is used.In either way, aligning your sequence reads to th...
2624 days ago
- ...ch encoded with a single ASCII character for brevity. It was originally developed at the W...ecently become the de facto standard for storing the output of high-throughput sequencing instru...
2623 days ago
- ...cleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nucleo...information of whole genome, it is evident that it cannot replace other alignment-based phylogenetic metho...
2622 days ago
- ...-alone program for scaffolding pre-assembled contigs using NGS paired-read data....the order, distance and orientation of your contigs and combine them into scaffo...rl. The input data is given by pre-assembled contig sequences (FASTA) and NGS pai...
2621 days ago
CLA: Contig-Layout-Authenticator
...Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). T...e CLA pipeline can scaffold reference-sorted contigs based on paired reads, resul...ing the consensus draft. The CLA pipeline was designed and trained extensively on...2621 days ago
- ...open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of b...data, meaning that there are forward and reverse reads, which we will designate as Sample_R1.fastq and Sa...
2621 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...GIT addresses the need for software to generate high quality draft genomes. It is...that we developed: ABACAS, that is able to contiguate contigs from a de novo as...n when using the same data sets as used by the original assembler. iCORN, that e...2614 days ago
