CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...dicting the ancestral order and orientation of those intervals from their observe...the results from this method with data from chromosome painting experiments to pr...quence of the last ancestor of human, dogs, and most other placental mammals;...2601 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...ble assemblers it is hard to select the best tool. In this context we propose a tool that improves assembl...ps even assemblers) by merging them and selecting the generating that is most likely to be correct.2600 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-g...2600 days ago
2598 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
.... The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information such as ge...2596 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...and every CAZyme family along with its location in all the relevant full-length CAZyme proteins in all sequenced genomes; dbCAN provides the most complete set of metagen...2590 days ago
Genome Annotation Transfer Utility (GATU)
...ation of similar genomes using genomes that have already been annotated. For example, whenever a new strain of SARS coronavirus is sequenced, it is possible, using GATU, to automati...2590 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...5/ncomms11307/full/ncomms11307.htmlFeatures Mapping position agnostic to alignment parameters.&n...ew de novo genome assembly project called Ra (https://github.com/mariokostelac/ra-integrate).Ra attempt...2581 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims...2576 days ago
Genetic-mapper: SVG Genetic Map Drawer
...nkscape and Abobe Illustrator(R). The input file must be a text file with at least the marker name (ID), linkage group (LG) and the position (POS) separeted by tabulations. Ad...2569 days ago