Results for "PA"
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...p;Velvet in general, how to accurately estimate the insert size of a paired-end library through the use of Bowtie, the primary parameters of velvet, and the pr...2763 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV ca...inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX is a tool for d...
2761 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-the-art tools for each step as well as new co...
2761 days ago
- ...r or primer sequences in an error-tolerant way. It can also modify and filter reads in various ways. Adapter sequences can contain IUPAC wildcard characters. Also, paired-end reads and even colors...
2758 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also useful for the same: http://...2760 days ago
- .... Do not use this option if you provide reads files; -1) (Comma separated list of) either .fastq or .sam file(s) corresponding to the first read of the read pair; -2) (Comma separat...
2759 days ago
CISA: Contig Integrator for Sequence Assembly
...r guarantees the optimal assembly for diverse species. Optimizing various parameters in an assembler is of...contigs, resulting in assemblies of superior contiguity and accuracy, compared with the assemblies genera...2757 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective...ly, the mapping and alignment of mate pair read pairs to a reference g...ert sizes, introduction of library preparation protocol artifacts (bio...ignment programs when processing mate pair sequencing. Availability: h...2757 days ago
- Comparative genomics remains a pivotal strategy to study t...h, bioinformatic tools available to visualize and compare genomes and to infer evolut...cus, a new synteny browser that can represent and compare unlimited numbers of genome...
2756 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Desp...the results are still far from those achievable with long reads. In this paper, we propose a novel method...2753 days ago
