Results for "R"
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Microbiome analysis using a single...application MEGAN6 is a comprehensive toolbox for interactively analyzing micro...ysis using the NCBI taxonomy or a customized taxonomy such as...oronoi tree maps and many other charts PCoA, clustering and...eds of millions of sequencing reads. Blast-like analysis can...2893 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2891 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using sequencing data. The...from multiple individuals.Genome STRiP looks both across and withi...mixtures of paired and single-end reads. A minimum of 20 to 30 ge...
2850 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you t...-miseq_. Point to note: There are many situations where A5...ets consisting solely of unpaired reads are not currently sup...
2869 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www....)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included as submo...t clone https://github.com/BilkentCompGen/tardis.git --recursive h...2574 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of...for beginners to use, but VAGUE makes it clear and simple More at http...2679 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between d...bsp;hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37...AM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is designed to liftover...
2851 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to...mbus accepts the output from most current assemblers and provides t...an specified by mate-pairs. Such sources of information include ali...
2871 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exac...identify SNPs, indels and alternative splicing events. It can...Illumina datasets of up to 1G reads. Its memory consumption i...ults. The choice of the post-treatment depends on the availab...
2871 days ago
- VALET is a pipeline for performing de novo validation...omic assemblies. VALET checks a number of properties that should hol...or a correct assembly (e.g., mate-pairs are aligned at the correct d...olations of these invariants are reported allowing one to pinpoint a...
2834 days ago
