Circoletto: visualizing sequence similarity with Circos
..., which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offline use (so...2338 days ago
circosJS: d3 library to build circular graphs
Circos is a javascript library to easily build interactive graphs in a circular layout. It's based on d3.js. It aims to be a javascript version of the Circos software. You should consider using Circos to show: relationships between entities periodical data2335 days ago
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Protein Subcellular Localization Prediction
Assigning subcellular localization to a protein is an important step towards elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computa...2319 days ago
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REGEN: Ancestral Genome Reconstruction for Bacteria
...d by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any...2314 days ago
PhyloGrapher - Graph Visualization Tool
...ements. In general, it is possible to use PhyloGrapher to visualize any type of relations between elements. https://www.youtube.com/watch?v=WgufqYMHCvM2312 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
...tance. While it is prevalent in prokaryotes, HGT is less frequent in eukaryotes and particularly in Metazoa. Here, we propose Alienness, a taxonomy-aware web application available a...2308 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic...2307 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...(Many-against-Many sequence searching) is a software suite to search and cluster...ce sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linu...d (as beta version, via cygwin) Windows. The software is designed to run on multi...2298 days ago