coursera genome assembly tutorial
Solutions to Coursera Genome Sequencing (Bioinformatics II)2412 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It t..., it takes about 3 minutes to assemble a bacterial genome. Under the default setting, m...confirms that at least for high-coverage bacterial genomes,...2410 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wik...ith features for the assembly of large and complex genomes.Song Gao, Denis Bertrand, Bu...exact scaffolding of large, repeat-rich eukaryotic genomes w...2410 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as...able that we used for sequencing the S. cerevisiae genome. To make use of these data, w...ore complete representation of the features of the genome an...2408 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the c...uantitative approaches for comparing and analyzing genomes starting from raw sequencing...e across the tree of life. The topics will include genome as...2408 days ago
2408 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in each tab on the...2408 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenet...loXML, extensibility as well as domain specific applications are ensured. The structure of phyloXML is described by&n...2408 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2407 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline design...t is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome as...2404 days ago