NCBI Prokaryotic Genome Annotation Pipeline
...k chapter. NCBI's annotation pipeline depends on several internal databases and is not currently available for download or use outside of the NCBI environment. https://www.ncbi.nlm...2603 days ago
2599 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can prod...2595 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of conti...2595 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, mem...ave also performed a quantitative comparison of AVID with other popular alignment...d for the alignment comparisons, as well as the AVID program, are publicly availa...2595 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...ynteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny...es by using prebuilt alignments in the UCSC genome browser database, (ii) visualize and download syntenic...2595 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...bsp;unique features compared with CAZy database and CAT: dbCAN provides the capability of aut...CAZyme annotation of a given genome submitted by the user; dbCAN provides an explicitly defined ...2590 days ago
Genome Annotation Transfer Utility (GATU)
...For example, whenever a new strain of SARS coronavirus is sequenced, it is possib...automatically annotate the new strain using a previously-annotated strain of SARS...peptides. Although it was designed for use with viral genomes, GATU can also be...2590 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...7/full/ncomms11307.htmlFeatures Mapping position agnostic to alignment parameters. Consistently very high sensitivity and precision across differ...2581 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...ata sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data. The overview section of the BEDOPS v2.4....2576 days ago