CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologo...lements fast greedy search algorithm and rigorous stati...ftware on both simulated and biological realistic data and compared its performance with similar existing software and data...2418 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of...useful complement to standard bioinformatics analyses prior to submission of genomic data...2414 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European e...eds, and outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data...2414 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a un...to design and build a suite of tools specifically for MinION data. Resu...organize, summarize and visualize MinION nanopore sequencing data....2414 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanop...ncludes a functions to generate a number plots for examining the...ted in the quality assement of the raw or event level data,...2414 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for...ford Nanopore (ONT) bacterial data sets. Including the mapping s...te. In addition, on the whole data set (assembled in ~30 min), th...| tar zxf - ln -s selfSampleData/pacbio_filtered.fastq reads.fq...ttps://github.com/lh3/minimap &&...2410 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST wit...2410 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-ca...e esoteric sources of noise that may be present in real data...2409 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore h...or sequencing the S. cerevisiae genome. To make use of these data, we de...r correction of the nanopore reads using complementary MiSeq data...2408 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for...genomic analyses. We will study the leading computational and...es starting from raw sequencing data. The course will focus on huma...cs will include genome assembly & compa...enomics, variant identification & analysis, gene expression &am...2408 days ago