2600 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...sting HTS scaffolders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a...ult is further improved when additional data, in the form of related genome sequences, are used.2597 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...lies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequenci...2597 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo as...ns with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome y...2596 days ago
AVID: A Global Alignment Program
...The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic...of assemblies to alignment of large syntenic genomic regions and whole genome human/mouse alignments. We have...2596 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file....een alternative sequencing methods for a sequence-based project, e.g. should th...2596 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks....synteny blocks among multiple species by using prebuilt alignments in the UCSC genome b...2596 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...ehensive CAZyme annotation of a given genome submitted by the user; dbCAN...elevant full-length CAZyme proteins in all sequenced genomes; dbCAN provides the most comp...p;of the existing CAZyme families based on sequence similarities; dbCAN make all...2591 days ago
Genome Annotation Transfer Utility (GATU)
...ficient annotation of similar genomes using genomes that have already been annot...strain of SARS coronavirus is sequenced, it is possible, using GAT...map genes from the reference genome (the annotated strain) to the n...s designed for use with viral genomes, GATU can also be used to help...2591 days ago
2591 days ago