CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual asse...art assemblers to generate different sets of contigs for bacterial genomes. A tool, named CISA, has b...2760 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants and chromos...he mapping and alignment of mate pair read pairs to a reference genome is a challenging and time c...2760 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can...2760 days ago
E-MEM: Efficient computation of Maximal Exact Matches
...a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for i...e, E-MEM: Efficient computation of Maximal Exact Matches for very large genomes, Bioinformatics ...2760 days ago
2759 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce h...old problems have become even more difficult, de novo assembly being on top of th...ite efforts to design tools able to assemble, de novo, an organism sequenced with...2756 days ago
GARM:Genome Assembly, Reconciliation and Merging
...untu, Fedora and BioLinux distributions. The method merges contigs or scaffolds from different assemblers using the same or different sequencing technologies. When scaffolds are pro...2756 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing...ce contiguity and correctness of both. GAM-NGS does not rely on global alignment: re...gions of the two assemblies representing the same genomic locus (called&nb...2756 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number...2756 days ago
2756 days ago