Results for "R"
Bookmarks
OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical maps. The input text f...to be in GenBank flat file format, whereas the output format can be c...gh-quality, detailed circular maps of organellar genomes like the plas...2871 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout...ing repeat element boundaries and family relationships from sequence dat...
2869 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2869 days ago
- Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an in.... The format of these files and their content is discussed in the v...problematic sites. The R package vcfR provides tools to facilitate...
2868 days ago
- Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.
2865 days ago
- Recent technological progress has greatly facilitated&nb...nbsp;genome sequencing. However, de novo assemblies...ontiguous sequence (contigs) arranged in thousands of scaffol...emblies Citation This software is fully described in the pa...alone BLAT v. 32×1). Source Binaries .Cytoscape (tested...
2863 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework for...Structural Variant Discovery." Genome Biology 15 (6): R84. doi:10.1186/gb-2014-1...
2862 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST data...be used by biocurators and researchers who need accurate gene predi...uk. If you use GeneValidator in your work, please cite us as follo...2861 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid...to annotate the sequence. Both search by signal, content and homo...ons in most cases. http://genome.crg.es/courses/Bioinformatics200...
2861 days ago
- Collections of few handy tools for bioinformatician http://molbiol-tools.ca/Convert.htm
2858 days ago
