Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence...2334 days ago
2328 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomi...2324 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary b...a about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...ics, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2302 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source...ding J. MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature...2293 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that pr...t has four distinct modes that are useful for different types of phylogenetic analysis: RAxML, File Converter, MS Co...2293 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variatio...lotype (meplotype) association study; and (3) epigenome-wide association meta-analysis.2293 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and env...tists 2016 November - Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis 2017 October - Uppsala2267 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...require them to be error-corrected. After the initial assembly, Flye performs an extra repeat classification and analysis step to improve the structural accuracy of the resulting sequence. The package also includes a...2249 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combined consensus assembly using the best seg...algorithm that merges multiple assemblies of a genome into a single superior sequence...2246 days ago