AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical f...comparison of assemblies to alignment of large syntenic genomic regions and whole genome human/...2596 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinde...2596 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny block...nteny blocks among multiple species by using prebuilt alignments in the UCSC genome browse...2596 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-acti...d comprehensive CAZyme annotation of a given genome submitted by the user; dbCAN...full-length CAZyme proteins in all sequenced genomes; dbC...2591 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate qu...k, efficient annotation of similar genomes using genomes that have already been annot...ms to map genes from the reference genome (the annotated strain) to the...it was designed for use with viral genomes, GATU...2591 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262580 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads...t parameters. Circular genome handling to resolve coverage drops near ends of the genome. E-value.&n...o used as an overlapper in a new de novo genome assemb...2582 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and compu...2567 days ago
2564 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Genera...2554 days ago