GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loc...ty of resources such as ENCODE, Roadmap Epigenomics, and GTEx by facilitating data integration and hypothesis ge...2362 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome a...tomatically generates alignments from the provided data. Optional feature annotations...pid exploration and manipulation of the visualized data as well as the export of publ...2361 days ago
2352 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials...genetic variation from pan-genome sight. At the same time, analytical result data from many other programs, inc...2348 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspir...ryoploteR is to offer the user an easy way to plot data along the genome to get broad...2005 days ago
2339 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMm...2338 days ago
circosJS: d3 library to build circular graphs
Circos is a javascript library to easily build interactive graphs in a circular layout. It's based on d3.js. It aims to be a javascript version of the Circos software. You should consider using Circos to show: relationships between entities periodical data2327 days ago
2325 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing...uplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely availabl...2321 days ago