Results for "CA"
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...of exon annotations. These annotations can be a combination of both exon predictions (e.g. Genscan) and annotations that have b...ons in other genomes and record significant alignments between exons. C...ques that are not part of a run are discarded. The extents of each run...2701 days ago
FSA: Fast Statistical Alignment
...rings the high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such as aligning t...ster than a direct approach with little loss of accuracy. FSA can quickly align very long sequ...2701 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymo...2701 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...formation from dense genotype data. It describes ancestry in an efficient way suitable for a range of further analyses, including population identification and admixture dating.2694 days ago
- ...alize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annota...ccepted and used to store variants detected. The Cancer Genome Atlas Project has...s as long as the data is in MAF format. Maftools can also handle ICGC Simple Soma...
2691 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference seque...
2691 days ago
- ...a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons...cus on handling genome assembly data. The application is available at:http://so...all BLAST comparisons and file parsing automatically via a simple GUI. Contig...
2691 days ago
- ...from voluminous BLAST textual output, so as to locate the rearrangements, inserti...of genome segments between species or strains.It can be easily used to compare, p...inter-species or inter-strains. In addition, it can also show other sequence fea...
2690 days ago
- ...quence and annotation information from several eukaryotic species. A user can additionally import their ow...Sockeye by using custom 3D models. Ensembl-derived and imported sequences can be analyzed by using a suite...
2690 days ago
- ...l (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, an...ed on most operating systems (Windows, MacOS, Linux). Users can input data into J-Circos usi...
2690 days ago
