2551 days ago
2547 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strate...ly related species. Input formats, automated data upload from the UCSC Genome Browse...2541 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different p...2536 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of...ces such sequences for ancestral genomes at the internal nodes of the...ion and deletions in addition to genome rearra...2536 days ago
2535 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor availab...here are more and more researchers sequencing new genomes. These researchers require t...the functional features of their newly sequenced genomes. With...2533 days ago
2530 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role...he potential and limitations of computational and experimental approaches to genome analys...2524 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short...ds derived from the 15.4 megabase genome of the haploid yeast Pic...ia stipitis. More than 95% of the genome is recovered, with no errors;...d prospects for assembling larger genomes are d...2431 days ago