GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interva...2366 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotati...2366 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate ne...ommonly used software method for aligning genome assemblies. A quick script ca...n demand. Dot, an interactive viewer for genome-genome...2361 days ago
2356 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Se...nservative levels, and genetic variation from pan-genome sight. At the same time, anal...l result data from many other programs, including genome alignme...2352 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of...ir capacity for transposition inside genomes, they can frequently transpo...d by the unprecedented amount of new genomes available. Despite the recog...viral genomic fragment into the host genome. https...2352 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the i...2347 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R...loteR is to offer the user an easy way to plot data along the genome to get...2009 days ago
2343 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure...bsp;program in MUMmer4 is easily able to handle alignments of large genomes;2342 days ago