miniasm: very fast OLC-based de novo assembler for noisy long reads
...kes all-vs-all read self-mappings (typically by minimap) as...ford Nanopore (ONT) bacterial data sets. Including the mapping s...assembles 9 out of 12 PacBio datasets and 3 out of 4 ONT datase...te. In addition, on the whole data set (assembled in ~30 min), t...| tar zxf - ln -s selfSampleData/pac...2410 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with...2410 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, p...as well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists. "T...2409 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines usin...oteric sources of noise that may be present in real data ("dust", bubbles, merged clus...hese additional sources may optionally applied. simNGS take...2409 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated a...cing the S. cerevisiae genome. To make use of these data, we developed a novel open-so...ion of the nanopore reads using complementary MiSeq data and...2408 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for student...zing genomes starting from raw sequencing data. The course will focus on hum...ve genomics, variant identification & analysis, gene expression & regulation, personal genome analysis, and cancer genomics. The gra...2408 days ago
2408 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data for...2408 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements f...s interoperability between various applications and database...2408 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2407 days ago