Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evol...2418 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including insertion/del...2418 days ago
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Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...se Taxoblast, a simple pipeline with a graphical user interface, for the post-assembly detection of contam...bioinformatics analyses prior to submission of genomic data to public repositories. Our analysis pipeline...2414 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...g data. As a package for R, poRe has been tested on Windows, Linux and MacOSX. Crucially, the Windows vers...at https://sourceforge.net/p/rpore/wiki/Home/ Contact:mick.watson@roslin.ed.ac.uk...2414 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...we think will be useful for this task. However, nanopore sequencing is an emerging and rapidly developing technology. It is not clear what will be most informative. We hope that&nb...2414 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...Server, Windows 7 32bit and 64bit, Ubuntu 10.04 64bit, Ubuntu 10.10 64bit, and gentoo AMD64. The corresponding publication can be found here: B. Voss*, M. Hanselmann*, B.Y. Renar...2413 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...the miniasm N50 is reduced to 1.79Mb. Miniasm still needs improvements. Miniasm confirms that at least for high-coverage bacterial genomes, it is possible to generate long contigs...2410 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...tware package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifications from a...2410 days ago