YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a...et al), a pairwise sequence aligner compatible with BLASTZ. Special scoring sets were derived to improve the performance, both in runtime and...2680 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to o...2680 days ago
2680 days ago
2678 days ago
2678 days ago
2675 days ago
2675 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning!...2675 days ago
2674 days ago
2674 days ago