Results for "R"
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OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org...sembled in a genome assembly project, in a process known as S...2011). Note that since the original publication, we have ma...arks, it has significantly improved corrected N50 and reduced...2847 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal...ole of a typical assembler, fermi also aims to preserve...a minimal set ofunitigs to represent all the information in r...ntigs with slightly longer N50. However, the major weakn...
2847 days ago
CGView - Circular Genome Viewer
...sed to display and navigate bacterial genomes. GView is useful for producing high-quality genome...e in publications and websites, or as a visualization tool in a...nd-zoom interface, or GView can write static images of a genome...greater user interaction, and more flexibility in how the genom...2837 days ago
BLAST Ring Image Generator (BRIG)
...pplication that can display circular comparisons between a large number of genomes, with a focus on h...e at: http://sourceforge.net/projects/brig If you have any q...al reference sequence and other sequences as concentric rings...ata. BRIG also accepts SAM-formatted read-mapping files enab...2826 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To b...rial. Refer to the PDF documents below for instructions on how to use DE...
2826 days ago
- Strudel is our graphical tool for visualizing genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a variety of different...syntenic relationships between genomes. All browsing and interaction with St...
2826 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42...icient. (Even a single node with 16GB of ram can handle over 1Gbp of seq...
2826 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chrom...imited number of loci of different types jointly, at any reco...sp;fitness can be jointly determined by different types of lo...among sub-populations can be replaced by a connectivity matr...2824 days ago
- The accurate description and annotation of structural variants can be comple...aditional cytogenetic coordinates down to the actual bas...fects challenging. The Rearrangement Overview page des...e table) gives a detailed description of the variant and its...
2824 days ago
- Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberrations. Currently, several computational m...umber aberrations (CNAs) of chromosomal segments in tumor gen...CNA-associated breaks that were previously pinpointed by the...
2205 days ago
