Results for "NT"
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...mated reconstruction of genome sequences in ancient genome analysis is a multifac...e-art tools for each step as well as new complementary tools tailored for ancient...ccessible format. https://genomebiology.biomedcentral.com/articles/10.1186/s1305...2762 days ago
- ...es, primers, poly-A tails and other types of unwanted sequence from your high-thr...he adapter or primer sequences in an error-tolerant way. It can also modify and f...and even colorspace data is supported. If you want, you can also just demultiple...
2758 days ago
Understanding Greedy Algorithms
...tational-and-systems-biology-spring-2014/lecture-slides/MIT7_91JS14_Lecture6.pdf http://schatzlab.cshl.edu/teaching/AssemblyClass/01.%20Assembly%20Intro.pdf http://lsl.sinica.edu....2760 days ago
- ...caffolds from NGS data (reads and contigs). The tool is written in P...e one needs to first map reads to contigs (instead of providing .sam...s produced after mapping reads to contigs and the resulting scaffold...p; -t) Bundle threshold. Pairs of contigs supported by number of rea...
2759 days ago
CISA: Contig Integrator for Sequence Assembly
...f genomes, however, no individual assembler guarantees the optimal assembly for d...wever, few efforts have been pursued to take advantage of multiple assemblies to...s state-of-the-art assemblers to generate different sets of contigs for bacterial...2757 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...r detecting genomic structural variants and chromosomal abnormalitie...fortunately, the mapping and alignment of mate pair read pairs to a...ment programs. Large insert sizes, introduction of library preparati...re accurate than popular NGS alignment programs when processing mate...2758 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...ming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration software. Produces mo...2757 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large...lease cite: N. Khiste, L. Ilie, E-MEM: Efficient computation of Maximal Exact...2015) 509 -- 514. For any questions, please contact Lucian Ilie: ilie@uwo...2757 days ago
- ...and compare genomes and to infer evolutionary events remain restricted to two or...question that can be investigated. Here we present Genomicus, a new synteny brow...tp://ftp.biologie.ens.fr/pub/dyogen/genomicus Contact: rf.sne.eigoloib@crh
2756 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old...2753 days ago
