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...ckeye by using custom 3D models. Ensembl-derived and imported sequences can be analyzed by using a suite of multiple and pair-wise alignment algorithms. The results of these comparative analyses are also displ...2695 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...in complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology alo...E-value score between homologs, maximally scoring chains of ordered gene pairs are computed and reported....2695 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of not o...ilter noisy outputs without missing the most important homologous segment pairs. http://www.iam.u-tokyo.a...
2690 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that est...ults for simulated and real datasets are discussed and provide evidence that ConPADE performs well as long as en...2688 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to tr...
2688 days ago
- ...ows the selective retrieval of only the required files (file masks, ls-lR parsing, recursive search, updat...essing of downloaded files (archive extraction, file conversion, etc.) capable of performing multiple dow...
2687 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2685 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...e found in downloads.----- PBJelly -----Read The Paper http://www.plosone.or...eline that aligns long sequencing reads (such as PacBio RS reads or long 454 read...draft genomes. ----- PBHoney -----Read The Paperhttp://www.biomedcentral.co...2685 days ago
splitbam: splits a BAM by chromosomes
...eates some empty BAM files if no sam record was found for a chromosome. A pair of 'mock' SAM-Records can a...hromosome having no read mapped -m | --mock : if option '-e', add a mock pair of sam records to the empty...2684 days ago
YASRA: Reference based assembler
...A (Yet Another Short Read Assembler) performs comparative assembly of short reads...nce genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compat...he LASTZ binary in your executable/binary search path before installing YASRA.2683 days ago
