Results for "Ra"
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...ig sequence data, e.g: Compare two vertebrate genomes Align billions of...a properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to se...te the likelihood of chance similarities between random sequences. Do split and...2748 days ago
- ...rom genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long re...rozygous genomes based on C. parapsilosis (13 Mb; CANPA) a...in dropbox, CANPA table, ARATH table).Runs took ~0.5 min f...
2748 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-c...assemble large genomes from Sanger reads. In contrast, real genomes often have lo...ng overlap-consensus-layout approach. De Bruijn graph-based assembly approach was...
2747 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes t...ng genes as anchors. This is the toolset for generating the synteny correspondenc...o-use and quick way to identify conserved gene arrays both within the same genome...
2746 days ago
- ...orithms using both probabilistic (MEME) and discrete models (MEME), which have complementary strengths. It also allows discovery of motifs with arbitrary insertions and deletions (G...
2744 days ago
- ...alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignments provide a basis for research into comparative genomics and the study of...
2025 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...nd archaeal) gene finding program developed at Oak Ridge Natio...e in 30 seconds or less. Accuracy: Prodigal is a highly accur...hat enables it to locate the translation initiation site with...gle genomic sequence or on a draft genome containing many sequ...2739 days ago
- ...or and build environment 150GB+ of memory on at least one machine when aligning mammal-sized genomes; less memory is needed for smaller genomes. Parasol or SGE for cluster support...
2720 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...enomes is continuously rising, allowing for comparative analyses of genomic varia...d on whole-genome alignments to elucidate structural differences arising from ins...dicated by arcs. Both methods allow for the integration of additional information...2718 days ago
- ...ed aligner. YAHA is as fast and accurate as BWA-SW at finding the si...le best alignment per query and is dramatically faster and more sens...ents, YAHA uses a directed acyclic graph to find the optimal set of...d from http://faculty.virginia.edu/irahall/YAHA. Contact: http://g...
2717 days ago
