jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC&nbs...2398 days ago
2398 days ago
Mugsy: multiple whole genome alignment tool
...lti-FASTA files and does not require a reference genome. To cite Mugsy, use: Angiuoli SV and Salzberg SL. Mugsy: Fast multiple alignment of closely related whole genomes.Bioi...2398 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity)...rams. To date, the main application of Moss has been in detecting plagia...lasses. Since its development in 1994, Moss has been very effective in t...detection algorithms (at least, over those known to us). Moss can curr...2398 days ago
2396 days ago
2394 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/mar...Mash requires c++11 to build, which is available in and GCC >= 4.8 and OSX >= 10.7. See http:/...2394 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures...nanopore sequencing technology. The first step of NanoSim is read characterization, w...uce in silico reads for a given reference genome. NanoSim is written in Python and R....2389 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...highly interactive visualization tool which enhances the integration of genome topology/physical structure with extensive genome annotation by juxtaposing the 3D model with diverse...2387 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
...shortage of tools for assembling HP genomes from the next generation sequencing (NGS) data. The initial approaches to assembling HP genomes were proposed in the pre-NGS era and are...2386 days ago