Results for "PE"
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...artography with tools like Google Maps© or Open Street Maps: exploring is do...panning. The current tree contains ALL species present in NCBI taxonomy...isplays various information and options: The species name (and the associated...2642 days ago
DeCoSTAR - Detection of Co-evolution
...acencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciation, duplication, loss, tr...2638 days ago
ChromHMM: Chromatin state discovery and characterization
...odels the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing...2633 days ago
- ...suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x2...
2625 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called...2625 days ago
- ...ence reads to the reference sequence is called mapping. The most used mappers of DNA-seq data are BW...a and Tophat, STAR or HISAT for RNA-Seq data. Mappers differ in which options the...
2620 days ago
- ...ty scores. Both the sequence letter and quality score are each encoded with a single ASCII character for brevity. It was originally developed at the Wellcome Trust S...
2619 days ago
- ...ble to assess the order, distance and orientation of your contigs and combine them into scaffolds. Currently we offer this as a command-line tool in Perl. The input data is given by...
2617 days ago
CLA: Contig-Layout-Authenticator
...draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-so...oss-check before constructing the consensus draft. The CLA pipeline was designed and trained...2617 days ago
- ...will serve as an example of how to use free and open-source genome assembly and s...will be referred to simply as “Species” since it is l...gnate as Sample_R1.fastq and Sample_R2.fastq, respectively. https://github.com/j...
2617 days ago
