MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration software. Produces mor...2755 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README f...source code can be downloaded here. If you use E-MEM, please cite: N. Khiste, L. Ilie, E-MEM...2754 days ago
2753 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...bly low cost compared to Sanger sequencing. Despite this, some old problems have...de novo assembly being on top of this list. Despite efforts to design tools able...e novo assembly in the presence of a closely related reference. The idea is to co...2751 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third...(Kurtz et al., 2004) packages. The pipeline was tested on Debian, Ubuntu, Fedora...ssemblers using the same or different sequencing technologies. When scaffolds are...2751 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...locks) are identified through reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an op...2751 days ago
2750 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...uce an improved contig set based on OLC based assembly. All overlap parameters (Minimum Overlap Length, Identity, etc) are user-declarable at runtime. It is written to run on Linux. Requiremen...2750 days ago
2750 days ago
2750 days ago