CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, zoomable ma..., allowing rapid genome browsing, and facilitating data sharing. The feature labels i...to be integrated with existing web site content or databases. For examples of the var...2202 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go throug...fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/3000/400...2194 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built c...ipt and HTML5, with optional run-once data formatting tools written in P...ge sequencing. Quickly open and view data files on your computer withou...d more. BAM, BigBed, BigWig, and VCF data are displayed directly from c...2194 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algo...embly from high-throughput sequencing data, they are very memory-intensi...limiting their applications to small data sets with few libraries. T...that contain hundreds of gigabases of data. New techniques are developed...2190 days ago
2190 days ago
ReMILO: reference assisted misassembly detection algorithm using short and long reads.
ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and...t reads to both the contigs and reference genome, and then constructs a novel data structure called red-black mu...2187 days ago
ASAR: Advanced metagenomic Sequence Analysis in R
An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional anal...2184 days ago
Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like othe...s, but allows multiple visualizations of data within genomic regions using...upplied visualizations. It also includes data from the Gene Expression...2184 days ago
Nanopolis: polish a genome assembly
Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs an...2167 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo assemblies...assemble discreet 'targets' contained within next-generation shotgun sequence data. ARC decomplexifies the tradi...2167 days ago